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Troubleshooting

Each entry describes a problem, how to fix it, and where to read more.

The import fails or The Stacks can’t read the doc

See Importing from Google Docs and Before you import.

Equation objects (Insert → Equation) and smart chips (anything inserted by typing @) break the import. Write math as LaTeX and paste links as plain text. See What carries over.

The import fails on a figure

Every :src: must be a public URL. Placeholder text or an empty value fails the import. See Figures and other media.

I can’t find my draft

Unfinished drafts are listed in the Your unfinished Pubs section of the Create a pub page.

My edits on The Stacks disappeared after re-importing

Re-importing replaces the title, subtitle, abstract, and body with the content of the Google Doc. If you work from the Google Doc, make your changes there instead of on the draft page. See Importing from Google Docs.

The title, subtitle, or abstract wasn’t picked up

See Document structure.

A directive shows up as plain text

See How directives work.

Formatting, footnotes, or drawings are missing

The Stacks keeps semantic formatting but drops visual styling: highlight, font color, fonts and sizes, underline, strikethrough, line spacing, and page breaks. Footnotes, text boxes, and drawings are dropped too; export drawings as images and add them as media. Suggested edits and comments aren’t imported, so accept or reject them first. See What carries over.

A section is missing from the table of contents

Only Heading 1 and Heading 2 appear in the table of contents. See Document structure.

The acknowledgments or competing interests block looks wrong

The heading inside each bordered block must be Heading 4. See Document structure.

A figure doesn’t float or wrap text

left and right only float narrow figures, roughly 65% width or less. The value must be lowercase. See Alignment.

A figure’s width is ignored

:width: needs a unit, like 100% or 400px. See Figures and other media.

A figure reference isn’t replaced with a number

See Referencing figures and tables.

Figures are numbered twice

The Stacks numbers figures automatically. Remove your own numbering from the captions. See Figures and other media.

A YouTube video doesn’t play

Use the embed URL, like https://www.youtube.com/embed/0peLwtqQX7I, not the watch?v= URL. See Alignment.

A table has no header row, or its alignment is lost

Make every cell in a row bold to format it as a header row. Column alignment set in Google Docs is not kept. See Tables.

A code block isn’t recognized

Paste the code with Paste without formatting (⌘+Shift+V or Ctrl+Shift+V), inside triple-backtick fences. See Code.

Math doesn’t render

Don’t put bold or italic formatting inside the dollar signs, and put $$ fences on their own paragraphs. See Math.

A collapsible section looks wrong

Use only one :::summary per :::details, directly after the opener, and don’t nest it inside another directive. See Collapsible content.

See Links within your doc.

A citation is missing from the reference list

Only :ref links become citations. A bare DOI string, a visible link to a journal, PubMed, or bioRxiv page, and the Google Docs “citation” feature all render as ordinary text or links.

See Cite a paper with a DOI.

A citation of software or a website doesn’t resolve

The url in the @Misc entry must exactly match the :ref link. Put the :::bibtex block at the end of the doc, after the acknowledgments, and start each entry with @ on its own line. See Cite software and other sources without a DOI.

I can’t publish on The Stacks

Publishing is currently restricted to participants in projects at Arcadia Science and at the Astera Institute. See Who can publish.

The Release publication… button isn’t available

A required field is still missing. The list above the button tells you what to fix. See Release / publish.

My publication has no DOI

DOIs are only minted if your organization has DOI minting turned on. See Versions and DOIs.

I can’t change the slug, license, or DOI

These are locked once the publication is first released. Other changes ship as a new version.

Edit opens an old draft

If a draft of the next version already exists, Edit opens it instead of starting a new one. See Drafts and versions.